RhodoBase.Org
- Online Tools for Rhodobacter sphaeroides Transcriptional Network Analysis
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Enter Gene List
Gene Centric List
Network Visualisation
Motif Search
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Network Visualisation
Job Name
:
Target Gene List
*
:
Data set
:
Best 100 (from UW)
Pooled 200 from 3 labs (coming soon)
Oxygen Regulation subset (Houston & Laramie, coming soon)
Distance measure
:
Pearson correlation
Kendall rank correlation
Euclidian distance
Nodes display
:
Rank
Value
Operon visualisation method
:
Genes only
Operons
Dynamic neighbourhoods
Operons & dynamic neighbourhoods
Neighbourhoods formation stringency
:
- max number of foreign genes
- same strand only
Connection pooling method
:
All connections
Pooled interoperon connections